Software

Overview

This page contains software I have developed over the years. I will be uploading sporadically but my aim is to publish all code used in papers I’ve first authored or co-authored.

This Website

  1. This is a Quarto Website .

  2. Quarto websites are a type of RStudio Project.

  3. Built and is maintained in RStudio and Positron.

  4. Each webpage is edited as a Quarto document.

  5. A YAML file is used to organize the Quarto document webpages into a functional website.

  6. The updated files are committed to my local Git Repository used for version control.

  7. The committed changes are pushed to the remote GitHub Repository which uploading any new files simultaneously

  8. The remote repository GitHub files are then processed with GitHub Actions - automatically triggered by the git push - which builds and deploys the Quarto website to GitHub Pages, forming this website: https://candrewbasham.github.io/web/.

PhD Thesis Research

Post-TB Airway Disease

R code

Survival analysis (Rmd) with hdPS, lasso-hdPS, robust Poisson, and other sensitivity analyses.

Journal Article

https://doi.org/10.1016/j.eclinm.2021.100752

TB-Associated Depression

R code

Mediation analysis of depression risk by TB via hospital LOS (ordinal measure)

Journal Article

https://www.sciencedirect.com/science/article/abs/pii/S1047279721001253?via%3Dihub

Multimorbidity Prevalence and Chronic Disease Patterns

R code

Multimorbidity prevalence ratios comparing TB survivors with non-TB controls

Journal Article

https://doi.org/10.17269/s41997-022-00711-y